Information for 1-ACATAATGCATGC (Motif 3)

C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
Reverse Opposite:
A C T G A G T C G T C A A C G T C T A G A G T C C G T A A C G T A C G T C G T A A C G T A C T G C G A T
p-value:1e-12
log p-value:-2.792e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.0 +/- 22.1bp
Average Position of motif in Background39.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC
ATGCATWATGCATRW
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACATAATGCATGC---
TNNATTATGCATANNTT
 A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC
ATGAATAATTAATG-
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC
ATGAATWATTCATGA
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACATAATGCATGC
TGAATTATGCAT--
 A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC-
ATGCATAATTAATGAG
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

ZNF143/MA0088.2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACATAATGCATGC
TACCCACAATGCATTG
 A C G T A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC
TATCATAATTAAGGA
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ACATAATGCATGC
GAAAAAATTGCAAGG
 A C G T A C G T C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:ACATAATGCATGC--
-----ATGMATATDC
 C G T A A G T C C G T A C G A T C G T A G T C A A C G T A C T G A G T C C G T A A C G T C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C