Information for 13-AGATGCATATGTGAGT (Motif 20)

C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C C G A T G T A C C G T A A G T C C G T A A C G T C T G A A C G T T A C G G T A C C T G A A C G T A G T C C G A T
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.907
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.7 +/- 8.8bp
Average Position of motif in Background33.4 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bhlha15/MA0607.1/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
----CCATATGT----
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
--ATGMATATDC----
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
---ACCATATGTT---
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGATGCATATGTGAGT
---ANCATATGTT---
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGATGCATATGTGAGT
ATATGCAAATNNN---
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGATGCATATGTGAGT
AAAATATGCATAATAAA--
 A C G T A C G T A C G T C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
--ATGAATATTC----
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

Neurog1/MA0623.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
---ACCATATGGT---
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T C T G A T A G C T G A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGATGCATATGTGAGT
---GACATATGTT---
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGATGCATATGTGAGT
-YATGCATATRCATRT
 C G T A A C T G G T C A A G C T C A T G A G T C C G T A A G C T C G T A A C G T C T A G A C G T A C T G C G T A A C T G A C G T
A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T