Information for 3-AGCCACTTTSCYT (Motif 6)

C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T
Reverse Opposite:
C T G A C T A G A T C G A T C G C G T A C T G A C G T A A C T G G A C T A C T G A C T G G T A C A G C T
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.713
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif60.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets37.8 +/- 20.2bp
Average Position of motif in Background45.6 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0115.1_Nkx2-6/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTTSCYT-
TAAGCCACTTAACATT
 A C G T A C G T C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGCCACTTTSCYT---
----ACTTTCACTTTC
 C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

PRDM1/MA0508.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGCCACTTTSCYT----
--TCACTTTCACTTTCN
 C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTTSCYT-
TAAGCCACTTGAAATT
 A C G T A C G T C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTTSCYT-
TAAGCCACTTGAATTT
 A C G T A C G T C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGCCACTTTSCYT---
----ACTTTCGTTTCT
 C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTTSCYT-
TAAGCCACTTGAAATT
 A C G T A C G T C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGCCACTTTSCYT-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCCACTTTSCYT
-ACCACTTAA---
 C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCCACTTTSCYT
-ACCACTTAA---
 C T G A C A T G A G T C G T A C C T G A T G A C A C G T A G C T G C A T A T G C A T G C A G T C A G C T
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T