Information for 5-CATCCCTTACAGCAGG (Motif 20)

A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C T G
p-value:1e-7
log p-value:-1.640e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 18.9bp
Average Position of motif in Background64.3 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CATCCCTTACAGCAGG---
----CCACACAGCAGGAGA
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CATCCCTTACAGCAGG---
-------CACAGCAGGGGG
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CATCCCTTACAGCAGG---
----CCACACAGCAGGAGA
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CATCCCTTACAGCAGG--
-TCNCTTTACAGCGNNNT
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATCCCTTACAGCAGG--
-TCNNTTTACAGCGNNNT
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATCCCTTACAGCAGG--
-TCNNTTTACAGCGNNNT
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T
A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CATCCCTTACAGCAGG
------DCTCAGCAGG
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CATCCCTTACAGCAGG---
----GAGCACAGCAGGACA
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CATCCCTTACAGCAGG-----
------DCHCAGCAGGRGGCC
 A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0098.1_Zfp410_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CATCCCTTACAGCAGG
NNNTCCATCCCATAANN----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C A G T C A G T C A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A A C G T A C G T A C G T A C G T