Information for 3-AGTAAAACSAGMG (Motif 4)

C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
Reverse Opposite:
A G T C A C T G A G T C A C G T A T C G A C T G A C G T A C G T A G C T A C G T C G T A A G T C A C G T
p-value:1e-13
log p-value:-3.052e+01
Information Content per bp:1.910
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.5 +/- 26.9bp
Average Position of motif in Background25.8 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAACSAGMG
NGYCATAAAWCH----
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGTAAAACSAGMG
CCAATAAAAA-----
 A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAACSAGMG
NCYAATAAAA------
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGTAAAACSAGMG
CCAATAAAAA-----
 A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGTAAAACSAGMG
CCAATAAAAC-----
 A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGTAAAACSAGMG
CAAAAGTAAACAAAG--
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAACSAGMG
CTACCAATAAAATTCT--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAACSAGMG
GGTCGTAAAAA-----
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTAAAACSAGMG
AGTCGTAAAAA-----
 A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAACSAGMG
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T C G T A C T G A G T C A G T C A A G T C A T G C C G T A A C T G G T A C C T A G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T