Information for 11-GGGCTAATTCAAT (Motif 20)

A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G C T G A C G T A A C G T C G A T C G T A A C T G A G T C A G T C A G T C
p-value:1e-8
log p-value:-1.914e+01
Information Content per bp:1.931
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.4 +/- 14.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0131.1_Pax4/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGGCTAATTCAAT--
NNGNGCTAATTAGNTNA
 A C G T A C G T A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGGCTAATTCAAT--
---YTAATYNRATTA
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GGGCTAATTCAAT--
----TAATTAAATTA
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCTAATTCAAT----
-AATCAATTCAATAATT
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGCTAATTCAAT--
----TAATTTAATTA
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGCTAATTCAAT--
----TAATTTAATTA
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGGCTAATTCAAT---
----TAATTNVATTAN
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

DUX4/MA0468.1/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGGCTAATTCAAT--
----TAATTTAATCA
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGGCTAATTCAAT
---YTAATTAVHT
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T
A C G T A C G T A C G T A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

mix-a/MA0621.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGCTAATTCAAT
--NCTAATTAANN
 A C T G C T A G A C T G A G T C A C G T C G T A C G T A A C G T A G C T T G A C C G T A C G T A A C G T
A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T