Information for 13-GCAATCAGCC (Motif 38)

A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
Reverse Opposite:
C T A G A C T G G T A C A C G T A C T G G T C A G A C T A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.545e+01
Information Content per bp:1.842
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif125.3
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets43.4 +/- 29.9bp
Average Position of motif in Background46.9 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAATCAGCC
CCAATCAA--
 A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GCAATCAGCC--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCAATCAGCC----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

EN2/MA0642.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAATCAGCC
CCCAATTAGC-
 A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GCAATCAGCC
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAATCAGCC
GGCCATTAAC-
 A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCAATCAGCC
-----CAGCC
 A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAATCAGCC-
CTGGCAGNCTGCCA
 A C G T A C G T A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAATCAGCC---
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A C G T A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCAATCAGCC----
---GTCAGCANNTN
 A C T G G T A C G T C A C T G A A C G T G T A C C G T A A C T G A G T C G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T