Information for 16-GCTAAAGTTAACA (Motif 30)

A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G A T C G T A C G T A A G T C A C G T C G A T A C G T C T G A A T C G A T G C
p-value:1e-8
log p-value:-1.973e+01
Information Content per bp:1.915
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 16.2bp
Average Position of motif in Background39.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAAGTTAACA--
TGCCAAAATAAACANN
 A C G T A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0109.1_Bbx_2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCTAAAGTTAACA-----
-TGATTGTTAACAGTTGG
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GCTAAAGTTAACA
---AAAGTAAACA
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GCTAAAGTTAACA
---AAAGTAAACA
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCTAAAGTTAACA
-NCTAAGTAAACA
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTAAAGTTAACA----
--CAAAGTAAACANNNN
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCTAAAGTTAACA--
---TATGTAAACANG
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTAAAGTTAACA---
-NCWRWGTAAACANSV
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

PH0167.1_Tcf1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTAAAGTTAACA----
NTTTTAGTTAACNNAGN
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCTAAAGTTAACA--
---TAAGTAAACAAA
 A T C G A T G C A G C T C G T A C G T A C G T A A C T G A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A