Information for 3-GCAATAAATAHTTATT (Motif 8)

A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
Reverse Opposite:
C G T A C G T A A G C T C T G A C G T A C G T A C G A T C G T A A C G T A C G T A C G T C G T A A C G T A C G T A C T G G T A C
p-value:1e-10
log p-value:-2.519e+01
Information Content per bp:1.817
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.9 +/- 17.9bp
Average Position of motif in Background74.5 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd9/MA0913.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCAATAAATAHTTATT
GCAATAAAAA------
 A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCAATAAATAHTTATT
GCAATAAAA-------
 A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCAATAAATAHTTATT
AAGCCATAAAA-------
 A C G T A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAATAHTTATT
GGTAATAAAAA------
 A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCAATAAATAHTTATT
AAAGGTAATAAAATTT----
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCAATAAATAHTTATT
GTCATAAAAN------
 A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCAATAAATAHTTATT
ACCGGCAATTAATAAA----
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCAATAAATAHTTATT
AGAGCCATAAAATTCG---
 A C G T A C G T A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAATAHTTATT
GGCCATAAATCAC----
 A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCAATAAATAHTTATT
NGCAATTAAA-------
 A C G T A C T G A G T C G T C A C G T A A C G T G T C A C G T A C G T A C G A T C G T A G A C T A C G T A G C T C T G A A C G T C G A T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T