Information for 9-CGCGTAAGAYTAG (Motif 18)

A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G
Reverse Opposite:
A G T C A C G T C T G A C T A G A C G T A G T C A C G T A C G T C G T A G T A C A C T G G T A C A C T G
p-value:1e-8
log p-value:-1.950e+01
Information Content per bp:1.877
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 25.8bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGCGTAAGAYTAG
GCTCGTAAAAA---
 A C G T A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGCGTAAGAYTAG
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGCGTAAGAYTAG
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CGCGTAAGAYTAG-
------AGATAAGA
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CGCGTAAGAYTAG-
------GGATTAGC
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CGCGTAAGAYTAG
-----RGGATTAR
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Gata4/MA0482.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGCGTAAGAYTAG-
---NNGAGATAAGA
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CGCGTAAGAYTAG-
----NVAGATAAGR
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGCGTAAGAYTAG--
-----NAGATAAGNN
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C A G T C G A

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CGCGTAAGAYTAG--
-----CAGATAAGGN
 A G T C A C T G A G T C A C T G A C G T G T C A C G T A A C T G C G T A A G C T A G C T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A