Information for 3-TGGATCAAWGTCCAAC (Motif 7)

A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
Reverse Opposite:
A C T G C A G T C G A T A C T G A T C G C G T A G T A C C G A T C A G T C G A T A C T G C G T A G A C T G T A C G A T C G T C A
p-value:1e-9
log p-value:-2.109e+01
Information Content per bp:1.704
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.2 +/- 24.9bp
Average Position of motif in Background30.7 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC
GGGGTCAAAGTCCAAT
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TGGATCAAWGTCCAAC
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGGATCAAWGTCCAAC
AGAGTCCAAAGTCCA--
 A C G T A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC--
--GGCAAAAGTCCAATAA
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC
GGGGTCAAAGGTCA--
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC
GGGGTCAAAGGTCA--
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC
GGGGTCAAAGGTCA--
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGATCAAWGTCCAAC
-AGGTCANTGACCTN-
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGATCAAWGTCCAAC
AAAGGTCAAAGGTCAAC
 A C G T A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGATCAAWGTCCAAC
TGGGGCAAAGGTCA--
 A C G T C A T G A C T G C G T A C G A T A G T C C G T A G T C A C G T A A C T G C G A T A T G C A G T C C G T A G T C A T A G C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T