Information for 1-CATWWAATTTWAT (Motif 6)

G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T
Reverse Opposite:
C G T A C G A T C G T A C G T A C G T A C G T A C G A T A C G T C G T A C G T A C G T A C G A T C A T G
p-value:1e-9
log p-value:-2.223e+01
Information Content per bp:1.758
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif5.04%
Number of Background Sequences with motif51.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets45.6 +/- 23.1bp
Average Position of motif in Background44.3 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CATWWAATTTWAT
ACGGCCATAAAATTAAT-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CATWWAATTTWAT--
ANNATTTAATTAATTNN
 A C G T A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0093.1_Lhx3/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATWWAATTTWAT---
GAAATTAATTAAATAAT
 A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CATWWAATTTWAT
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CATWWAATTTWAT---
CGAATTAATTAAAAACC
 A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T A C G T
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C

PROP1/MA0715.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CATWWAATTTWAT--
----TAATTAAATTA
 G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CATWWAATTTWAT----
-NNTAATTATAATNANN
 G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T A C G T A C G T
A C G T G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PH0101.1_Lmx1b/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATWWAATTTWAT--
AGTTTTTAATTAATTTG
 A C G T A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATWWAATTTWAT
TAGGTAATAAAATTCA--
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CATWWAATTTWAT--
----TAATTAAATTA
 G T A C C G T A C G A T C G A T C G A T C G T A C G T A C G A T C G A T C G A T C G A T C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A