Information for 2-CAAAGGCAAG (Motif 3)

G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
Reverse Opposite:
G A T C A C G T C G A T C T A G T A G C G A T C A G C T G A C T C A G T C A T G
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.683
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif17.99%
Number of Background Sequences with motif1880.2
Percentage of Background Sequences with motif3.89%
Average Position of motif in Targets48.0 +/- 23.4bp
Average Position of motif in Background50.0 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CAAAGGCAAG---
--AAGGCAAGTGT
 G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAAAGGCAAG
AAAAGTCAA-
 G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAAGGCAAG
CAAAGGTCAG
 G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGCAAG
ACATCAAAGGNA--
 A C G T A C G T A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CAAAGGCAAG
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CAAAGGCAAG
AAAGATCAAAGGAA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGCAAG
AACAAAGG----
 A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAAAGGCAAG---
--CAGGTAAGTAT
 G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G A C G T A C G T A C G T
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGCAAG
ACATCAAAGG----
 A C G T A C G T A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGCAAG
AAAACAAAGG----
 A C G T A C G T A C G T A C G T G T A C G T C A C T G A C T G A C T A G A T C G G A T C G C T A T G C A C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T