Information for 3-CCANAAAANTRAG (Motif 11)

A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
Reverse Opposite:
A G T C C G A T A G T C C G T A G C A T C G A T A G C T A G C T A C G T C G A T C G A T A C T G C T A G
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.746
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif6.47%
Number of Background Sequences with motif173.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets47.3 +/- 19.4bp
Average Position of motif in Background45.9 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCANAAAANTRAG
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCANAAAANTRAG
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCANAAAANTRAG
AGAGCCATAAAATTCG-
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCANAAAANTRAG
CTACCAATAAAATTCT-
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCANAAAANTRAG
AAGCCATAAAA-----
 A C G T A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCANAAAANTRAG
GTCATAAAAN----
 A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCANAAAANTRAG
CCAATAAAAA----
 A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCANAAAANTRAG
CCAATAAAAC----
 A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCANAAAANTRAG
NCYAATAAAA-----
 A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCANAAAANTRAG
CCYMATAAAA-----
 A C G T A C G T A G T C G T A C C G T A G C A T C G T A C T G A C T G A C G T A C G T A A C G T C T A G C G T A C T A G
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T