Information for 6-TGCCWSWCACATGTCA (Motif 24)

A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
Reverse Opposite:
A G C T A T C G G T C A G T A C C G T A A G C T C T A G A C G T A C T G C G A T A T G C C G A T A T C G C T A G A G T C C T G A
p-value:1e-3
log p-value:-8.854e+00
Information Content per bp:1.755
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 20.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
----TGACACCTGTCA
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
-----GTCACGTGGM-
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
----TGACACCTGTCA
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCCWSWCACATGTCA
CTGTCTGTCACCT----
 A C G T A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
----TGACAGCTGTCA
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
----GGTCACATGAC-
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
TGTCTGDCACCT----
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:8
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
------ACACGTGGC-
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T

HEY2/MA0649.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
-----GGCACGTGNC-
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:TGCCWSWCACATGTCA
-------CACGTGDC-
 A G C T A C T G G A T C A T G C C G T A A T C G C G T A A G T C C G T A A G T C T C G A A C G T A C T G A C G T A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T