Information for 2-GTCCAAAGTTCAA (Motif 2)

C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
Reverse Opposite:
G A C T C G A T C T A G C T G A C T G A G T A C A C G T A C G T C G A T A C T G T A C G G T C A G A T C
p-value:1e-19
log p-value:-4.380e+01
Information Content per bp:1.769
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.6 +/- 28.0bp
Average Position of motif in Background39.8 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GTCCAAAGTTCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----GTCCAAAGTTCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTTCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GTCCAAAGTTCAA---
GGCAAAAGTCCAATAA
 C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GTCCAAAGTTCAA
---CAAAGGTCAG
 C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTTCAA
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTTCAA
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

Rarg/MA0859.1/Jaspar

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GTCCAAAGTTCAA
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTTCAA
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTCCAAAGTTCAA-
AAAGGTCAAAGGTCAAC
 A C G T A C G T A C G T C T A G C A G T A G T C A G T C C G T A C G T A C G T A A C T G A G C T A G C T A G T C C G T A C G T A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C