Information for 4-AGCTCTCAGACACAAA (Motif 13)

C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C T A G C G A T A T C G A C G T A G T C A C G T A C T G C G T A A C T G C T G A C T A G A G T C A C G T
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.907
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 30.5bp
Average Position of motif in Background55.2 +/- 38.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:AGCTCTCAGACACAAA--
--------AAAACAAAGG
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCTCTCAGACACAAA
AGGTGNCAGACAG---
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGCTCTCAGACACAAA-----
-----AAACAGACAAAGGAAT
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCTCTCAGACACAAA
AGGTGHCAGACA----
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGCTCTCAGACACAAA-----
------CTCACACAATGGCGC
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----AGCTCTCAGACACAAA
AACTAGCTGTCAATAC----
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGCTCTCAGACACAAA
-----BCAGACWA---
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGCTCTCAGACACAAA
-----CCAGACAG---
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGCTCTCAGACACAAA---
-WNAGTCADAVTGAAACTN
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
A C G T G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCTCTCAGACACAAA-
CAAATCCAGACATCACA
 C G T A A C T G A G T C A G C T G T A C C G A T A G T C G T C A C T A G C G T A A T G C C G T A A G T C C G T A C G T A C G T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A