Information for 11-CCACTAGAGGGAG (Motif 12)

A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
Reverse Opposite:
A G T C A C G T G T A C T G A C G T A C A C G T G T A C A G C T C T G A A T C G C G A T A C T G A C T G
p-value:1e-10
log p-value:-2.449e+01
Information Content per bp:1.828
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif43.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.2 +/- 28.4bp
Average Position of motif in Background42.9 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGAGGGAG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGAGGGAG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGAGGGAG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGAGGGAG
NSCACTYVAV----
 A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGAGGGAG
ACCACTTGAA----
 A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCACTAGAGGGAG
CCACTTGAA----
 A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCACTAGAGGGAG
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGAGGGAG
RSCACTYRAG----
 A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGAGGGAG
ATCCAC---------
 A C G T A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGAGGGAG
MRSCACTYAA-----
 A C G T A C G T A G T C A G T C C G T A A T G C A G C T C T G A A C T G C G T A A C T G A C T G A C T G G T C A A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T