Information for 2-GGCACAGGCTGGCDVA (Motif 2)

C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
Reverse Opposite:
A C G T A C T G G A T C A T C G A G T C T A G C C G T A C T A G A T G C A G T C C G A T A T C G A C G T C T A G G T A C A G T C
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.734
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif6.56%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets65.0 +/- 25.6bp
Average Position of motif in Background46.9 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGCACAGGCTGGCDVA
--CACAGN--------
 C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGGCTGGCDVA
CCAGGAACAG---------
 A C G T A C G T A C G T C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGGCTGGCDVA
GAGCACAGCAGGACA--
 A C G T C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGCACAGGCTGGCDVA--
--NGTAGGTTGGCATNNN
 C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGCACAGGCTGGCDVA
----TWGTCTGV----
 C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GGCACAGGCTGGCDVA
-GCAGTGATTT-----
 C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGGCTGGCDVA
VAGRACAKNCTGTBC--
 A C G T C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-GGCACAGGCTGGCDVA
NAGAACAGNCTGTNCT-
 A C G T C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGGCTGGCDVA
AGCAACAGCCGCACC--
 A C G T C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.47
Offset:8
Orientation:forward strand
Alignment:GGCACAGGCTGGCDVA
--------TTGGCA--
 C T A G A C T G A G T C G T C A A T G C C G T A A C T G A T C G A G T C A C G T A T C G C T A G A T G C C A T G T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T