Information for 2-AAAASTTGGGAAGTGG (Motif 5)

C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G
Reverse Opposite:
A T G C A G T C G T C A G T A C C G A T A G C T G A T C A G T C A G T C C G T A C G T A A T C G A C G T A C G T A C G T A C G T
p-value:1e-12
log p-value:-2.917e+01
Information Content per bp:1.794
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 29.7bp
Average Position of motif in Background44.6 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAASTTGGGAAGTGG
GAAAAAATTGCAAGG---
 A C G T A C G T C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAAASTTGGGAAGTGG
--AAGGTGTKAA----
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG-----
----NTNNTTAAGTGGTTANN
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG-----
----NTNNTTAAGTGGNTNAN
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG
-AAGCTTG--------
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG-
--------TTAAGTGGT
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG-
--------TTAAGTGGN
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AAAASTTGGGAAGTGG----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG-
-------NTCAAGTGGN
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AAAASTTGGGAAGTGG
-NNCGTTGCTATGGNN
 C G T A C G T A C G T A G T C A A T G C C G A T A C G T A C T G T C A G C T A G C T G A C G T A A C T G A C G T C T A G A T C G
A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A