Information for 2-ACTCTGTSCTTAA (Motif 4)

C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
Reverse Opposite:
A G C T C G A T C T G A C G T A A T C G A T G C C G T A A G T C C G T A C T A G C G T A A C T G A C G T
p-value:1e-13
log p-value:-3.008e+01
Information Content per bp:1.821
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.7 +/- 25.4bp
Average Position of motif in Background50.4 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACTCTGTSCTTAA--
CNTTAAGTACTTAANG
 A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACTCTGTSCTTAA---
TACTAAGTACTTAAATG
 A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACTCTGTSCTTAA
AAATCACTGC----
 A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ACTCTGTSCTTAA
--GCTGTGGTTT-
 C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ACTCTGTSCTTAA
TGGACTTTGNNCTNTG
 A C G T A C G T A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ACTCTGTSCTTAA
TGGACTTTGNNCTCN-
 A C G T A C G T A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----ACTCTGTSCTTAA
AGNACAGNCTGTTCTN--
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ACTCTGTSCTTAA
GVACAGNMTGTYCTB--
 A C G T A C G T A C G T A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ACTCTGTSCTTAA
GAACADWATGTTCTT--
 A C G T A C G T A C G T A C G T C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:ACTCTGTSCTTAA
---CTGTGGTTTN
 C G T A G T A C A C G T A G T C G C A T C T A G A C G T A T C G A T G C A C G T A G C T C G T A C T G A
A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G