Information for 4-TTTATGGGAACAAAGG (Motif 12)

C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T A G C T C G A T A C T G A C G T C G A T A G T C A G T C A G T C C G T A A C G T C T G A C G T A C G T A
p-value:1e-10
log p-value:-2.530e+01
Information Content per bp:1.865
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 14.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG
------GGAACAAAGR
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TTTATGGGAACAAAGG----
---AGAAGAACAAAGGACTA
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG
------AAAACAAAGG
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTTATGGGAACAAAGG----
---ATAAGAACAAAGGACTA
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG
------VRRACAAWGG
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG
--------AACAAAGG
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG-
-------GAACAATGGN
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTATGGGAACAAAGG
NTTTTATTGG--------
 A C G T A C G T C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTTATGGGAACAAAGG
TTTTATKRGG-------
 A C G T C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:TTTATGGGAACAAAGG
--------RACAAWGG
 C G A T A C G T A G C T C G T A C G A T A C T G A C T G A C T G C G T A G T C A A G T C C G T A C T G A C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G