Information for 7-CGCCAATAAA (Motif 8)

A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A
Reverse Opposite:
C A G T A C G T C A G T G T C A G C A T G C A T C A T G A T C G T A G C T C A G
p-value:1e-12
log p-value:-2.823e+01
Information Content per bp:1.553
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif14.59%
Number of Background Sequences with motif3379.1
Percentage of Background Sequences with motif7.39%
Average Position of motif in Targets50.3 +/- 27.2bp
Average Position of motif in Background50.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.85
Offset:2
Orientation:forward strand
Alignment:CGCCAATAAA--
--CCAATAAAAC
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.84
Offset:2
Orientation:forward strand
Alignment:CGCCAATAAA--
--CCAATAAAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CGCCAATAAA--
--CCAATAAAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CGCCAATAAA-
-CCYMATAAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CGCCAATAAA-
-NCYAATAAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CGCCAATAAA-----
AACCCAATAAAATTCG
 A C G T A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CGCCAATAAA-----
CTACCAATAAAATTCT
 A C G T A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CGCCAATAAA-
-NGCAATTAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CGCCAATAAA-
--GCAATAAAA
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CGCCAATAAA---
-NGYCATAAAWCH
 A G T C A T C G T A G C G T A C C G T A C G T A C A G T G T C A T G C A G T C A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A