Information for 4-AACCAATCGG (Motif 5)

C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
Reverse Opposite:
T A G C G T A C A C T G G C T A A G C T C G A T C A T G C A T G G C A T G A C T
p-value:1e-14
log p-value:-3.245e+01
Information Content per bp:1.665
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif1090.6
Percentage of Background Sequences with motif2.38%
Average Position of motif in Targets42.8 +/- 26.6bp
Average Position of motif in Background50.2 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AACCAATCGG
AGCCAATCGG
 C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----AACCAATCGG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGG
ACTAGCCAATCA-
 A C G T A C G T A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AACCAATCGG------
TGGACCAATCAGCACTCT
 A C G T A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AACCAATCGG
GAACAATGG-
 C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACCAATCGG
HNRAATCAAT---
 A C G T A C G T A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AACCAATCGG
NAACAAT---
 C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACCAATCGG
GTAAACAAT---
 A C G T A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AACCAATCGG
VRAACAATGG-
 A C G T C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACCAATCGG
MRSCACTYAA
 C T G A C G T A G T A C G T A C G C T A T C G A C G A T T G A C C A T G A T C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A