Information for 2-THGGGTBHTGADTAGT (Motif 3)

A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
Reverse Opposite:
C T G A A G T C A C G T C G T A G C T A A G C T A G T C C G T A C A T G T G A C C G T A G T A C A G T C A G T C C G A T C G T A
p-value:1e-13
log p-value:-3.123e+01
Information Content per bp:1.760
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.8 +/- 21.4bp
Average Position of motif in Background65.3 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYA/MA0060.2/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:THGGGTBHTGADTAGT---
-AGAGTGCTGATTGGTCCA
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T A C G T A C G T A C G T
A C G T G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

LHX6/MA0658.1/Jaspar

Match Rank:2
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:THGGGTBHTGADTAGT
------NCTAATTAGT
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.51
Offset:7
Orientation:forward strand
Alignment:THGGGTBHTGADTAGT-
-------ATGAATATTC
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:THGGGTBHTGADTAGT----
----GNCTTAATTAGTGNNN
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

EVX2/MA0888.1/Jaspar

Match Rank:5
Score:0.50
Offset:6
Orientation:forward strand
Alignment:THGGGTBHTGADTAGT
------GGTAATTAGC
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

HNF1B/MA0153.2/Jaspar

Match Rank:6
Score:0.49
Offset:3
Orientation:forward strand
Alignment:THGGGTBHTGADTAGT
---GTTAATGATTAAC
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
A C G T A C G T A C G T C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:THGGGTBHTGADTAGT-
--NGTTAATNATTAACN
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T A C G T
A C G T A C G T C G T A C A T G A G C T G C A T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G A T C G A C T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:THGGGTBHTGADTAGT
-------TTGATTGN-
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

DUXA/MA0884.1/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:THGGGTBHTGADTAGT----
-------NTGATTAAATTAN
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

EVX1/MA0887.1/Jaspar

Match Rank:10
Score:0.48
Offset:6
Orientation:forward strand
Alignment:THGGGTBHTGADTAGT
------GGTAATTAGC
 A C G T G C T A C T A G A C T G A C T G C G A T A C T G G A T C A C G T A C T G C T G A C G A T A C G T C G T A A C T G G A C T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C