Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 793)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48264)	% of Background Sequences with Motif
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-22	-5.202e+01	0.0000	61.0	7.69%	767.4	1.59%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-20	-4.615e+01	0.0000	74.0	9.33%	1246.8	2.59%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-19	-4.548e+01	0.0000	68.0	8.58%	1079.3	2.24%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-19	-4.509e+01	0.0000	47.0	5.93%	522.8	1.08%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-19	-4.392e+01	0.0000	39.0	4.92%	358.6	0.74%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-18	-4.342e+01	0.0000	60.0	7.57%	888.5	1.84%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-18	-4.155e+01	0.0000	64.0	8.07%	1044.0	2.16%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-16	-3.897e+01	0.0000	58.0	7.31%	919.1	1.91%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.321e+01	0.0000	26.0	3.28%	323.5	0.67%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-9	-2.298e+01	0.0000	43.0	5.42%	830.5	1.72%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-8	-1.991e+01	0.0000	27.0	3.40%	407.2	0.84%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-8	-1.891e+01	0.0000	20.0	2.52%	238.9	0.50%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-7	-1.838e+01	0.0000	109.0	13.75%	3779.8	7.84%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.713e+01	0.0000	38.0	4.79%	834.8	1.73%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-5	-1.350e+01	0.0000	40.0	5.04%	1047.9	2.17%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-5	-1.346e+01	0.0000	25.0	3.15%	497.4	1.03%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.239e+01	0.0001	49.0	6.18%	1472.2	3.05%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-5	-1.205e+01	0.0001	81.0	10.21%	2947.1	6.11%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.201e+01	0.0001	10.0	1.26%	96.7	0.20%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-5	-1.187e+01	0.0001	11.0	1.39%	120.8	0.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-5	-1.168e+01	0.0001	39.0	4.92%	1091.2	2.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-5	-1.162e+01	0.0001	49.0	6.18%	1516.9	3.15%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-1.091e+01	0.0003	56.0	7.06%	1871.2	3.88%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4	-1.046e+01	0.0004	44.0	5.55%	1368.0	2.84%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-1.033e+01	0.0005	10.0	1.26%	117.5	0.24%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-4	-1.024e+01	0.0005	39.0	4.92%	1166.4	2.42%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-1.002e+01	0.0006	70.0	8.83%	2592.5	5.38%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.660e+00	0.0008	100.0	12.61%	4111.5	8.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-9.471e+00	0.0010	33.0	4.16%	955.3	1.98%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-9.442e+00	0.0010	58.0	7.31%	2071.2	4.29%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-9.207e+00	0.0012	50.0	6.31%	1718.8	3.56%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-3	-9.047e+00	0.0013	44.0	5.55%	1457.4	3.02%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.306e+00	0.0027	7.0	0.88%	73.4	0.15%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-8.144e+00	0.0031	60.0	7.57%	2276.2	4.72%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-8.059e+00	0.0033	46.0	5.80%	1620.0	3.36%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.030e+00	0.0033	34.0	4.29%	1079.2	2.24%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-8.028e+00	0.0033	43.0	5.42%	1483.8	3.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-7.785e+00	0.0040	5.0	0.63%	37.2	0.08%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.710e+00	0.0042	47.0	5.93%	1693.1	3.51%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-7.701e+00	0.0042	76.0	9.58%	3112.2	6.45%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-7.624e+00	0.0043	75.0	9.46%	3070.6	6.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.593e+00	0.0044	66.0	8.32%	2623.9	5.44%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.592e+00	0.0044	94.0	11.85%	4047.2	8.39%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-7.365e+00	0.0052	40.0	5.04%	1394.1	2.89%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.157e+00	0.0063	13.0	1.64%	274.8	0.57%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-7.149e+00	0.0063	39.0	4.92%	1364.7	2.83%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-3	-7.080e+00	0.0065	32.0	4.04%	1051.1	2.18%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-6.811e+00	0.0084	48.0	6.05%	1817.6	3.77%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-6.504e+00	0.0111	10.0	1.26%	191.8	0.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.453e+00	0.0115	25.0	3.15%	782.1	1.62%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-6.449e+00	0.0115	18.0	2.27%	489.5	1.01%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.388e+00	0.0118	73.0	9.21%	3112.6	6.45%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-6.346e+00	0.0120	23.0	2.90%	702.4	1.46%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-6.276e+00	0.0127	53.0	6.68%	2113.5	4.38%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.131e+00	0.0144	42.0	5.30%	1589.7	3.30%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.129e+00	0.0144	38.0	4.79%	1398.9	2.90%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.736e+00	0.0206	65.0	8.20%	2782.0	5.77%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.571e+00	0.0239	54.0	6.81%	2239.5	4.64%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.382e+00	0.0284	43.0	5.42%	1709.6	3.54%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-5.278e+00	0.0309	5.0	0.63%	66.6	0.14%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.271e+00	0.0309	59.0	7.44%	2530.9	5.25%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-5.244e+00	0.0310	60.0	7.57%	2585.5	5.36%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.240e+00	0.0310	232.0	29.26%	12153.8	25.20%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.180e+00	0.0320	39.0	4.92%	1532.0	3.18%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.100e+00	0.0341	24.0	3.03%	825.1	1.71%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.096e+00	0.0341	15.0	1.89%	431.7	0.90%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.074e+00	0.0341	59.0	7.44%	2555.2	5.30%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.004e+00	0.0359	105.0	13.24%	5023.7	10.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-4.933e+00	0.0380	44.0	5.55%	1806.0	3.74%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-4.875e+00	0.0397	76.0	9.58%	3477.2	7.21%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-4.764e+00	0.0437	39.0	4.92%	1574.7	3.26%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.739e+00	0.0442	8.0	1.01%	173.8	0.36%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.604e+00	0.0499	146.0	18.41%	7385.1	15.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.483e+00	0.0556	12.0	1.51%	337.8	0.70%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.469e+00	0.0556	45.0	5.67%	1910.6	3.96%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.354e+00	0.0616	17.0	2.14%	559.6	1.16%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-4.350e+00	0.0616	30.0	3.78%	1171.6	2.43%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-4.216e+00	0.0689	39.0	4.92%	1634.5	3.39%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-4.136e+00	0.0737	83.0	10.47%	3978.7	8.25%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.077e+00	0.0772	34.0	4.29%	1397.3	2.90%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.069e+00	0.0772	84.0	10.59%	4045.8	8.39%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-4.056e+00	0.0772	20.0	2.52%	717.4	1.49%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-4.045e+00	0.0772	38.0	4.79%	1604.0	3.33%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.013e+00	0.0783	36.0	4.54%	1506.0	3.12%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.962e+00	0.0814	18.0	2.27%	631.1	1.31%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-3.895e+00	0.0861	16.0	2.02%	544.0	1.13%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.847e+00	0.0893	52.0	6.56%	2357.2	4.89%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.837e+00	0.0893	162.0	20.43%	8484.9	17.59%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.815e+00	0.0901	36.0	4.54%	1528.5	3.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.754e+00	0.0947	107.0	13.49%	5383.7	11.16%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.747e+00	0.0947	31.0	3.91%	1283.0	2.66%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.741e+00	0.0947	107.0	13.49%	5386.8	11.17%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.737e+00	0.0947	14.0	1.77%	464.6	0.96%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.704e+00	0.0954	34.0	4.29%	1439.2	2.98%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.703e+00	0.0954	7.0	0.88%	171.5	0.36%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.702e+00	0.0954	42.0	5.30%	1852.9	3.84%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.586e+00	0.1040	19.0	2.40%	707.7	1.47%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.571e+00	0.1045	27.0	3.40%	1100.1	2.28%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-3.303e+00	0.1352	34.0	4.29%	1488.0	3.09%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.282e+00	0.1367	12.0	1.51%	403.4	0.84%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.237e+00	0.1416	5.0	0.63%	112.1	0.23%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.235e+00	0.1416	67.0	8.45%	3270.3	6.78%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.200e+00	0.1441	7.0	0.88%	192.0	0.40%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.190e+00	0.1441	12.0	1.51%	409.3	0.85%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.109e+00	0.1547	31.0	3.91%	1357.8	2.82%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.048e+00	0.1630	27.0	3.40%	1158.7	2.40%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.987e+00	0.1716	186.0	23.46%	10128.3	21.00%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.962e+00	0.1743	17.0	2.14%	664.7	1.38%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.959e+00	0.1743	10.0	1.26%	333.7	0.69%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.915e+00	0.1794	67.0	8.45%	3334.0	6.91%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.877e+00	0.1846	19.0	2.40%	771.9	1.60%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.860e+00	0.1862	22.0	2.77%	924.8	1.92%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.798e+00	0.1964	172.0	21.69%	9374.7	19.44%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.735e+00	0.2073	32.0	4.04%	1460.9	3.03%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.698e+00	0.2132	5.0	0.63%	131.1	0.27%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.683e+00	0.2145	10.0	1.26%	351.5	0.73%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.673e+00	0.2148	35.0	4.41%	1629.7	3.38%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.654e+00	0.2171	67.0	8.45%	3390.3	7.03%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.641e+00	0.2181	4.0	0.50%	94.6	0.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.637e+00	0.2181	14.0	1.77%	546.9	1.13%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.623e+00	0.2184	83.0	10.47%	4298.5	8.91%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.608e+00	0.2199	47.0	5.93%	2291.9	4.75%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-2.575e+00	0.2253	142.0	17.91%	7701.3	15.97%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.575e+00	0.2253	15.0	1.89%	601.8	1.25%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.566e+00	0.2253	17.0	2.14%	702.8	1.46%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.533e+00	0.2294	16.0	2.02%	655.5	1.36%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.528e+00	0.2294	45.0	5.67%	2196.3	4.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.528e+00	0.2294	34.0	4.29%	1598.6	3.31%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-2.479e+00	0.2364	3.0	0.38%	62.2	0.13%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.462e+00	0.2387	62.0	7.82%	3153.9	6.54%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.397e+00	0.2528	14.0	1.77%	568.3	1.18%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.373e+00	0.2571	3.0	0.38%	65.7	0.14%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.354e+00	0.2601	18.0	2.27%	776.6	1.61%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.319e+00	0.2671	96.0	12.11%	5122.0	10.62%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.305e+00	0.2691	5.0	0.63%	148.6	0.31%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.282e+00	0.2732	8.0	1.01%	285.9	0.59%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.269e+00	0.2748	45.0	5.67%	2246.9	4.66%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.265e+00	0.2748	6.0	0.76%	194.5	0.40%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.219e+00	0.2847	1.0	0.13%	7.0	0.01%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.205e+00	0.2867	94.0	11.85%	5041.2	10.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.199e+00	0.2867	23.0	2.90%	1058.8	2.20%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.130e+00	0.3045	173.0	21.82%	9679.4	20.07%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.104e+00	0.3105	7.0	0.88%	250.2	0.52%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.092e+00	0.3119	14.0	1.77%	599.5	1.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.066e+00	0.3179	5.0	0.63%	160.3	0.33%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.064e+00	0.3179	10.0	1.26%	399.5	0.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.060e+00	0.3179	12.0	1.51%	500.3	1.04%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.028e+00	0.3236	6.0	0.76%	208.8	0.43%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.025e+00	0.3236	4.0	0.50%	118.5	0.25%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.016e+00	0.3236	79.0	9.96%	4234.5	8.78%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.998e+00	0.3269	57.0	7.19%	2981.3	6.18%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.986e+00	0.3287	10.0	1.26%	406.4	0.84%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.962e+00	0.3345	12.0	1.51%	511.0	1.06%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.961e+00	0.3345	4.0	0.50%	121.6	0.25%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.932e+00	0.3401	8.0	1.01%	311.9	0.65%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.924e+00	0.3407	55.0	6.94%	2886.3	5.98%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.923e+00	0.3407	5.0	0.63%	168.6	0.35%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.821e+00	0.3728	3.0	0.38%	84.9	0.18%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.821e+00	0.3728	31.0	3.91%	1557.0	3.23%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.808e+00	0.3730	2.0	0.25%	44.1	0.09%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.791e+00	0.3771	15.0	1.89%	687.1	1.42%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.787e+00	0.3771	16.0	2.02%	741.3	1.54%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.782e+00	0.3771	45.0	5.67%	2353.7	4.88%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.774e+00	0.3771	35.0	4.41%	1790.8	3.71%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.758e+00	0.3805	13.0	1.64%	586.0	1.21%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.748e+00	0.3817	10.0	1.26%	430.0	0.89%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.747e+00	0.3817	29.0	3.66%	1460.8	3.03%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.722e+00	0.3870	18.0	2.27%	858.8	1.78%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.706e+00	0.3909	33.0	4.16%	1692.7	3.51%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.689e+00	0.3956	73.0	9.21%	3988.4	8.27%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.672e+00	0.3999	10.0	1.26%	437.8	0.91%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.655e+00	0.4043	75.0	9.46%	4115.8	8.53%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.655e+00	0.4043	6.0	0.76%	234.8	0.49%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.646e+00	0.4043	54.0	6.81%	2903.9	6.02%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.614e+00	0.4139	61.0	7.69%	3316.3	6.88%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.602e+00	0.4169	21.0	2.65%	1042.8	2.16%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.601e+00	0.4169	99.0	12.48%	5537.8	11.48%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.597e+00	0.4169	3.0	0.38%	94.4	0.20%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.573e+00	0.4218	8.0	1.01%	343.0	0.71%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.566e+00	0.4224	167.0	21.06%	9575.4	19.85%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.507e+00	0.4457	20.0	2.52%	1003.6	2.08%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.499e+00	0.4466	28.0	3.53%	1454.0	3.01%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.486e+00	0.4502	17.0	2.14%	840.5	1.74%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.474e+00	0.4532	2.0	0.25%	55.4	0.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.464e+00	0.4552	1.0	0.13%	16.5	0.03%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.449e+00	0.4594	76.0	9.58%	4245.8	8.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.446e+00	0.4594	54.0	6.81%	2962.3	6.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.438e+00	0.4598	13.0	1.64%	627.2	1.30%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.435e+00	0.4598	5.0	0.63%	201.3	0.42%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.424e+00	0.4614	13.0	1.64%	629.9	1.31%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.416e+00	0.4626	57.0	7.19%	3146.0	6.52%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.397e+00	0.4689	108.0	13.62%	6152.9	12.76%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.391e+00	0.4692	64.0	8.07%	3563.8	7.39%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.373e+00	0.4754	17.0	2.14%	859.3	1.78%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.362e+00	0.4783	1.0	0.13%	18.6	0.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.356e+00	0.4786	38.0	4.79%	2061.9	4.28%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.338e+00	0.4848	5.0	0.63%	209.3	0.43%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.320e+00	0.4913	3.0	0.38%	109.7	0.23%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.285e+00	0.5060	15.0	1.89%	762.1	1.58%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.275e+00	0.5086	62.0	7.82%	3487.7	7.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.273e+00	0.5086	35.0	4.41%	1910.1	3.96%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.240e+00	0.5213	6.0	0.76%	271.3	0.56%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.237e+00	0.5213	8.0	1.01%	380.2	0.79%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.231e+00	0.5213	1.0	0.13%	21.8	0.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.210e+00	0.5296	30.0	3.78%	1637.6	3.40%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.177e+00	0.5446	35.0	4.41%	1937.3	4.02%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.166e+00	0.5482	8.0	1.01%	389.2	0.81%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.163e+00	0.5482	9.0	1.13%	445.0	0.92%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.155e+00	0.5485	1.0	0.13%	23.5	0.05%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.144e+00	0.5519	65.0	8.20%	3714.8	7.70%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.138e+00	0.5529	3.0	0.38%	121.6	0.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.094e+00	0.5751	68.0	8.58%	3913.3	8.11%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.065e+00	0.5889	33.0	4.16%	1854.0	3.84%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.051e+00	0.5945	21.0	2.65%	1154.6	2.39%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.049e+00	0.5945	22.0	2.77%	1213.6	2.52%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.046e+00	0.5945	32.0	4.04%	1800.3	3.73%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.045e+00	0.5945	7.0	0.88%	349.2	0.72%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.043e+00	0.5945	21.0	2.65%	1156.8	2.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.012e+00	0.6042	6.0	0.76%	297.3	0.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.806e-01	0.6206	28.0	3.53%	1584.6	3.29%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.756e-01	0.6209	10.0	1.26%	531.6	1.10%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.650e-01	0.6247	34.0	4.29%	1944.8	4.03%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-9.617e-01	0.6247	16.0	2.02%	883.9	1.83%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.427e-01	0.6331	5.0	0.63%	249.2	0.52%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.409e-01	0.6331	2.0	0.25%	82.4	0.17%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.409e-01	0.6331	13.0	1.64%	712.3	1.48%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.399e-01	0.6331	16.0	2.02%	888.9	1.84%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.982e-01	0.6502	13.0	1.64%	721.5	1.50%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.754e-01	0.6623	8.0	1.01%	432.5	0.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.661e-01	0.6656	76.0	9.58%	4500.6	9.33%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.654e-01	0.6656	4.0	0.50%	201.2	0.42%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.628e-01	0.6656	3.0	0.38%	144.1	0.30%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.477e-01	0.6693	28.0	3.53%	1626.8	3.37%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-8.462e-01	0.6693	69.0	8.70%	4089.9	8.48%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.315e-01	0.6744	4.0	0.50%	205.1	0.43%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.151e-01	0.6827	4.0	0.50%	207.5	0.43%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.014e-01	0.6891	49.0	6.18%	2906.3	6.03%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.854e-01	0.6973	25.0	3.15%	1467.1	3.04%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.835e-01	0.6973	19.0	2.40%	1107.4	2.30%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.757e-01	0.6983	3.0	0.38%	153.6	0.32%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.644e-01	0.7032	15.0	1.89%	872.4	1.81%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.410e-01	0.7169	17.0	2.14%	999.2	2.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.256e-01	0.7251	6.0	0.76%	339.0	0.70%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.114e-01	0.7324	9.0	1.13%	523.9	1.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.990e-01	0.7385	19.0	2.40%	1133.5	2.35%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.717e-01	0.7559	13.0	1.64%	776.5	1.61%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.675e-01	0.7560	50.0	6.31%	3033.8	6.29%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.581e-01	0.7601	3.0	0.38%	167.1	0.35%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.509e-01	0.7625	83.0	10.47%	5054.6	10.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.440e-01	0.7647	2.0	0.25%	107.1	0.22%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.222e-01	0.7784	51.0	6.43%	3119.5	6.47%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.124e-01	0.7830	27.0	3.40%	1654.3	3.43%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.094e-01	0.7830	18.0	2.27%	1102.8	2.29%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.064e-01	0.7830	60.0	7.57%	3679.5	7.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.981e-01	0.7849	4.0	0.50%	238.5	0.49%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.962e-01	0.7849	17.0	2.14%	1045.6	2.17%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.959e-01	0.7849	8.0	1.01%	488.0	1.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.819e-01	0.7884	25.0	3.15%	1544.4	3.20%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.794e-01	0.7884	8.0	1.01%	492.5	1.02%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.676e-01	0.7936	20.0	2.52%	1241.6	2.57%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.575e-01	0.7986	21.0	2.65%	1307.2	2.71%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.402e-01	0.8094	31.0	3.91%	1934.1	4.01%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.366e-01	0.8094	29.0	3.66%	1812.8	3.76%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.357e-01	0.8094	54.0	6.81%	3356.2	6.96%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.357e-01	0.8094	17.0	2.14%	1067.9	2.21%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.325e-01	0.8094	29.0	3.66%	1814.3	3.76%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.065e-01	0.8215	8.0	1.01%	511.5	1.06%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-4.983e-01	0.8252	5.0	0.63%	322.0	0.67%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.888e-01	0.8300	8.0	1.01%	516.4	1.07%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.852e-01	0.8300	26.0	3.28%	1651.8	3.42%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.834e-01	0.8300	21.0	2.65%	1339.1	2.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.732e-01	0.8337	39.0	4.92%	2468.6	5.12%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.641e-01	0.8383	3.0	0.38%	197.6	0.41%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.618e-01	0.8383	22.0	2.77%	1412.9	2.93%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.578e-01	0.8383	13.0	1.64%	845.6	1.75%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.560e-01	0.8383	76.0	9.58%	4775.0	9.90%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.491e-01	0.8386	25.0	3.15%	1607.1	3.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.342e-01	0.8482	19.0	2.40%	1236.1	2.56%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.320e-01	0.8482	33.0	4.16%	2119.6	4.39%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.278e-01	0.8482	75.0	9.46%	4737.1	9.82%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.168e-01	0.8539	10.0	1.26%	668.1	1.39%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.126e-01	0.8544	7.0	0.88%	474.2	0.98%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.124e-01	0.8544	4.0	0.50%	275.7	0.57%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.094e-01	0.8544	7.0	0.88%	475.7	0.99%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.057e-01	0.8544	19.0	2.40%	1250.6	2.59%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.046e-01	0.8544	16.0	2.02%	1059.6	2.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.040e-01	0.8544	14.0	1.77%	931.5	1.93%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.026e-01	0.8544	72.0	9.08%	4574.5	9.48%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.011e-01	0.8544	5.0	0.63%	345.7	0.72%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.945e-01	0.8544	3.0	0.38%	211.3	0.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.913e-01	0.8544	69.0	8.70%	4398.0	9.12%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.838e-01	0.8544	2.0	0.25%	143.8	0.30%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.785e-01	0.8544	2.0	0.25%	144.1	0.30%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.758e-01	0.8544	7.0	0.88%	486.8	1.01%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.736e-01	0.8544	25.0	3.15%	1650.1	3.42%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.632e-01	0.8552	9.0	1.13%	623.0	1.29%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.618e-01	0.8552	60.0	7.57%	3864.1	8.01%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.406e-01	0.8689	6.0	0.76%	431.9	0.90%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.184e-01	0.8855	12.0	1.51%	841.8	1.75%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.056e-01	0.8938	8.0	1.01%	580.8	1.20%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.048e-01	0.8938	22.0	2.77%	1502.5	3.12%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.877e-01	0.9040	8.0	1.01%	588.4	1.22%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.873e-01	0.9040	9.0	1.13%	657.0	1.36%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.819e-01	0.9040	34.0	4.29%	2293.8	4.76%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.774e-01	0.9044	6.0	0.76%	455.6	0.94%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.711e-01	0.9071	19.0	2.40%	1330.0	2.76%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.653e-01	0.9094	10.0	1.26%	735.9	1.53%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.590e-01	0.9121	34.0	4.29%	2314.6	4.80%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.455e-01	0.9216	2.0	0.25%	175.9	0.36%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.437e-01	0.9216	82.0	10.34%	5383.9	11.16%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.292e-01	0.9307	45.0	5.67%	3053.7	6.33%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.275e-01	0.9307	25.0	3.15%	1759.8	3.65%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.172e-01	0.9359	6.0	0.76%	483.9	1.00%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.135e-01	0.9363	19.0	2.40%	1375.6	2.85%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.101e-01	0.9366	3.0	0.38%	265.7	0.55%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.028e-01	0.9405	1.0	0.13%	103.4	0.21%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.985e-01	0.9415	7.0	0.88%	565.1	1.17%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.940e-01	0.9428	2.0	0.25%	192.3	0.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.861e-01	0.9473	2.0	0.25%	195.7	0.41%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.603e-01	0.9690	1.0	0.13%	116.8	0.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.597e-01	0.9690	10.0	1.26%	806.5	1.67%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.575e-01	0.9690	6.0	0.76%	519.9	1.08%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.522e-01	0.9690	18.0	2.27%	1368.1	2.84%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.517e-01	0.9690	101.0	12.74%	6751.4	14.00%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.506e-01	0.9690	19.0	2.40%	1438.5	2.98%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.471e-01	0.9690	2.0	0.25%	212.1	0.44%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.459e-01	0.9690	56.0	7.06%	3887.0	8.06%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.454e-01	0.9690	104.0	13.11%	6956.4	14.42%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.439e-01	0.9690	3.0	0.38%	297.8	0.62%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.372e-01	0.9690	81.0	10.21%	5512.4	11.43%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.179e-01	0.9774	2.0	0.25%	228.1	0.47%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.720e-02	1.0000	12.0	1.51%	1032.6	2.14%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.467e-02	1.0000	12.0	1.51%	1036.9	2.15%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-8.383e-02	1.0000	30.0	3.78%	2296.8	4.76%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.010e-02	1.0000	5.0	0.63%	512.8	1.06%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.975e-02	1.0000	3.0	0.38%	346.4	0.72%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.315e-02	1.0000	1.0	0.13%	161.0	0.33%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.631e-02	1.0000	7.0	0.88%	690.0	1.43%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.491e-02	1.0000	1.0	0.13%	168.5	0.35%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.242e-02	1.0000	3.0	0.38%	366.5	0.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.138e-02	1.0000	2.0	0.25%	275.9	0.57%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.569e-02	1.0000	1.0	0.13%	177.6	0.37%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.337e-02	1.0000	6.0	0.76%	654.7	1.36%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.325e-02	1.0000	2.0	0.25%	300.1	0.62%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.321e-02	1.0000	1.0	0.13%	192.3	0.40%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.093e-02	1.0000	11.0	1.39%	1055.4	2.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.753e-02	1.0000	2.0	0.25%	332.2	0.69%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.079e-02	1.0000	1.0	0.13%	275.1	0.57%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.120e-04	1.0000	50.0	6.31%	4503.4	9.34%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	86.5	0.18%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.1	0.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	103.3	0.21%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	25.4	0.05%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	103.3	0.21%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	59.6	0.12%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	31.6	0.07%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	28.7	0.06%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	99.8	0.21%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	50.4	0.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	17.0	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.6	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	23.5	0.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	43.9	0.09%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	30.0	0.06%