Information for 4-CATCGCTCCG (Motif 9)

A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G
Reverse Opposite:
G T A C C T A G A C T G G T C A A C T G G T A C C A T G G T C A A C G T C T A G
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.738
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif288.0
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets48.9 +/- 25.4bp
Average Position of motif in Background48.3 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CATCGCTCCG
----GCTCCG
 A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CATCGCTCCG---
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATCGCTCCG
NTATYGATCH-
 A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CATCGCTCCG--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CATCGCTCCG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATCGCTCCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CATCGCTCCG------
----GCTCCGCCCMCY
 A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATCGCTCCG----
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CATCGCTCCG
CCATTGTTC--
 A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CATCGCTCCG
YCTTTGTTCC-
 A C G T A G T C G T C A A C G T G T A C A C T G T A G C C A G T A G T C A G T C C A T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T