Information for 8-GCATCTCCAAGAC (Motif 8)

A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
Reverse Opposite:
A C T G A C G T A T G C C G A T A C G T A C T G A C T G C G T A A C T G C G T A A C G T C T A G A G T C
p-value:1e-12
log p-value:-2.840e+01
Information Content per bp:1.855
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.6 +/- 24.9bp
Average Position of motif in Background40.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCATCTCCAAGAC-
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCATCTCCAAGAC-------
-----TCCCAGMCRAGCCCC
 A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCATCTCCAAGAC
GHATATKCAT---
 A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCATCTCCAAGAC
--ATTTCCAAGAA
 A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCATCTCCAAGAC
GGCCACRCCCMK--
 A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCATCTCCAAGAC
ATTTGCATAACAAAG--
 A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCTCCAAGAC-----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCATCTCCAAGAC
GGGAATTTCC-----
 A C G T A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCATCTCCAAGAC
ATGAATATTCATGAG
 A C G T A C G T A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GCATCTCCAAGAC--
-------CCAGACAG
 A C T G A G T C G T C A A C G T G T A C A C G T A G T C A G T C G T C A C G T A A T C G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G