Information for 13-RCCCAGCTGG (Motif 22)

C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G
Reverse Opposite:
G A T C A T G C C G T A A T C G A G T C G A C T A C T G T A C G A C T G G A C T
p-value:1e-7
log p-value:-1.636e+01
Information Content per bp:1.683
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif7.44%
Number of Background Sequences with motif1682.2
Percentage of Background Sequences with motif3.49%
Average Position of motif in Targets54.5 +/- 29.4bp
Average Position of motif in Background51.2 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:RCCCAGCTGG
NAHCAGCTGD
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:2
Score:0.84
Offset:2
Orientation:forward strand
Alignment:RCCCAGCTGG--
--VCAGCTGBNN
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T A C G T
A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:3
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:RCCCAGCTGG--
--CCAGCTGTTN
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T A C G T
A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-RCCCAGCTGG-
NNVVCAGCTGBN
 A C G T C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.82
Offset:2
Orientation:forward strand
Alignment:RCCCAGCTGG--
--NCAGCTGCTG
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T A C G T
A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RCCCAGCTGG
-ANCAGCTG-
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G
A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:RCCCAGCTGG
NNACAGCTGC
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:RCCCAGCTGG
NAACAGCTGT
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G
T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:RCCCAGCTGG-----
DCHCAGCAGGRGGCC
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:RCCCAGCTGG---
-GCCAGCTGBTNB
 C T G A T G A C A T G C A G T C C T G A C T A G T A G C C G A T A T C G C T A G A C G T A C G T A C G T
A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C