Information for 2-AAAGTWCAAAGTCTAA (Motif 2)

G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
Reverse Opposite:
A C G T A C G T C T G A T C A G G T C A A T G C C G A T G C A T A C G T A C T G C G T A G C T A A T G C G C A T C A G T C A G T
p-value:1e-17
log p-value:-4.039e+01
Information Content per bp:1.620
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif83.8
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets45.8 +/- 23.4bp
Average Position of motif in Background49.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AAAGTWCAAAGTCTAA
CANAGNNCAAAGTCCA-
 A C G T G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
AGAGTCCAAAGTCCA-
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
AAAGATCAAAGG----
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA-
-GGGGTCAAAGTCCAAT
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA-
AAAGGTCAAAGGTCAAC
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA---
---GGCAAAAGTCCAATAA
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
--ACATCAAAGG----
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
--ACWTCAAAGG----
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
AAAGATCAAAGGAA--
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAAGTWCAAAGTCTAA
AAAGATCAAAGGGTT-
 G T C A G C T A C G T A T A C G C G A T G C A T T G A C G T C A C G T A C G T A A T C G A C G T A G T C A G C T T G C A T G C A
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T