Information for 11-TTAGAGAGTAGTT (Motif 14)

A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T
Reverse Opposite:
C G T A C G T A A T G C A C G T C G T A A G T C A C G T A G T C C G A T A T G C A C G T C G T A C G T A
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 20.2bp
Average Position of motif in Background45.3 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTAGAGAGTAGTT-----
-TACTAAGTACTTAAATG
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TTAGAGAGTAGTT---
------ACTAGTTAAC
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TTAGAGAGTAGTT-----
-TTCNAAGTACTTNNNNN
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TTAGAGAGTAGTT
---TTAAGTGCTT
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PH0129.1_Otx1/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TTAGAGAGTAGTT---
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TTAGAGAGTAGTT-----
-TTTTAAGTACTTAAATT
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TTAGAGAGTAGTT---
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGAGAGTAGTT
TCNCTTTACAGCGNNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:TTAGAGAGTAGTT
------AATAATT
 A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TTAGAGAGTAGTT---
NANAGGGATTAATTATN
 A C G T A C G T A C G T C G T A A T C G C G T A A C T G C G T A C T A G A C G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C