Information for 9-TGVTTTTAATTTT (Motif 10)

A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
Reverse Opposite:
C T G A C G T A C T G A C G T A A C G T C G A T C T G A C G T A C G T A C G T A A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.360e+01
Information Content per bp:1.887
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif19.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.1 +/- 25.0bp
Average Position of motif in Background52.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd9/MA0913.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TGVTTTTAATTTT
---TTTTTATTGC
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGVTTTTAATTTT---
TNAATTTTATTACCTN
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TGVTTTTAATTTT
----TTTAAT---
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TGVTTTTAATTTT-
---NTTTTATTACN
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T A C G T
A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGVTTTTAATTTT
--ATATTAATTAA
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

LMX1B/MA0703.1/Jaspar

Match Rank:6
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGVTTTTAATTTT
-----TTAATTAN
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
A C G T A C G T A C G T A C G T A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A

MNX1/MA0707.1/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TGVTTTTAATTTT-
----TTTAATTANN
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T A C G T
A C G T A C G T A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C

PB0001.1_Arid3a_1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGVTTTTAATTTT----
NNNTTTTAATTAANNNN
 A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T A C G T A C G T A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGVTTTTAATTTT
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGVTTTTAATTTT---
NTNAATTTTATTGNATT
 A C G T A C G T A C T G T A C G A C G T A C G T A C G T A G C T C G T A C G T A A C G T A G C T C G A T A G C T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T