Information for 4-TGCCTTTATT (Motif 8)

A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T
Reverse Opposite:
C T G A C T G A A G C T C G T A C G T A C G T A T A C G C T A G G T A C C G T A
p-value:1e-11
log p-value:-2.657e+01
Information Content per bp:1.835
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif184.0
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets51.1 +/- 26.9bp
Average Position of motif in Background49.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGCCTTTATT
--CCTTTGTT
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCCTTTATT--
--CCTTTGTTTT
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T
A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGCCTTTATT
--CCWTTGTY
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TGCCTTTATT--
---TTTTATTGC
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGCCTTTATT--
--YCTTTGTTCC
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTTTATT-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTTTATT-----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCCTTTATT-
-NCCATTGTTC
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGCCTTTATT----
---TTTTATGGCTN
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGCCTTTATT--
--TTTTTATTGG
 A C G T C A T G A G T C A T G C C G A T A C G T G C A T C T G A A G C T A G C T A C G T A C G T
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G