Information for 3-AACTTCACAAGWTTCT (Motif 7)

T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
Reverse Opposite:
C G T A C A T G C G T A C G T A C G A T A T G C A G C T A C G T A C T G C G A T C A T G G T C A C G T A C T A G A C G T A G C T
p-value:1e-9
log p-value:-2.298e+01
Information Content per bp:1.730
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets67.6 +/- 16.2bp
Average Position of motif in Background60.6 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AACTTCACAAGWTTCT
GANGTTAACTAGTTTNN
 A C G T T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AACTTCACAAGWTTCT
ANATTTTACGAGNNNN-
 A C G T T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AACTTCACAAGWTTCT
NAATTTTACGAGNTNN-
 A C G T T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AACTTCACAAGWTTCT
---TTMACACCTT---
 T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AACTTCACAAGWTTCT
TCCAATCCACA-------
 A C G T A C G T T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AACTTCACAAGWTTCT
-ATTGCACAATA----
 T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AACTTCACAAGWTTCT
SSAATCCACANN-----
 A C G T T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T A C G T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AACTTCACAAGWTTCT--
--TTTTACGACTTTCCAT
 T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T A C G T A C G T
A C G T A C G T C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AACTTCACAAGWTTCT
-ATTGCGCAAC-----
 T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AACTTCACAAGWTTCT
--CTTCACACCTA---
 T C G A C G T A G A T C A C G T A C G T G T A C G C T A A G T C G T C A C T G A T A C G C G T A C G A T A C G T G T A C C G A T
A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T A C G T A C G T