Information for 3-CGATTAACTG (Motif 6)

A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G A C G T A C G T C G T A C G T A A C G T G T A C C T A G
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.881
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets30.5 +/- 17.7bp
Average Position of motif in Background37.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGATTAACTG
ACCGATTAG---
 A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGATTAACTG
GGCCATTAAC--
 A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGATTAACTG----
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G A C G T A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGATTAACTG
YCATTAMC--
 A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CGATTAACTG--
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CGATTAACTG-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGATTAACTG
GCAATTAG---
 A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CGATTAACTG--
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

BSX/MA0876.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGATTAACTG
CCAATTAA---
 A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGATTAACTG
CGGATTAN---
 A C G T A G T C A C T G C G T A A C G T C G A T G T C A C G T A A G T C A C G T A T C G
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T