Information for 4-GACCTHGCTGCTT (Motif 5)

A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
Reverse Opposite:
G T C A C T G A A C T G A G T C C G T A A C T G G T A C C G T A G T C A A C T G C T A G A C G T A G T C
p-value:1e-12
log p-value:-2.777e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.3 +/- 26.8bp
Average Position of motif in Background46.5 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACCTHGCTGCTT
TGACCTTGAT----
 A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GACCTHGCTGCTT
TGACCTARTT----
 A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACCTHGCTGCTT
NTGACCTTGA-----
 A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GACCTHGCTGCTT
NNNNATGACCTTGANTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GACCTHGCTGCTT
ATGACCTTGA-----
 A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GACCTHGCTGCTT
NATGACCTTGA-----
 A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GACCTHGCTGCTT-
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GACCTHGCTGCTT
TGACCT--------
 A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GACCTHGCTGCTT
TGACCYCT------
 A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GACCTHGCTGCTT
GTGACCTT-------
 A C G T A C G T A C T G C G T A A G T C A G T C A C G T G A C T A C T G G T A C A C G T A C T G A G T C A G C T A C G T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T