Information for 6-GCCTTSTTGCCMG (Motif 8)

C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
Reverse Opposite:
A G T C A C T G A C T G A T C G A G T C G T C A C T G A A T C G C G T A C G T A C T A G A C T G A G T C
p-value:1e-11
log p-value:-2.714e+01
Information Content per bp:1.783
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif24.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets41.9 +/- 29.1bp
Average Position of motif in Background49.9 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCCTTSTTGCCMG
GCNGCCATCTTG----
 A C G T A C G T A C G T C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCCTTSTTGCCMG
-----CTTGGCAA
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCTTSTTGCCMG
GCCGCCATCTTG----
 A C G T A C G T A C G T C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCCTTSTTGCCMG-
-----NTTGGCANN
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCCTTSTTGCCMG--
------CTGCCCGCA
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCCTTSTTGCCMG-
----NNTTGGCANN
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCCTTSTTGCCMG
------TTGGCA-
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GCCTTSTTGCCMG-
------TTGACAGC
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCTTSTTGCCMG
TGGCAGNCTGCCAG
 A C G T C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCCTTSTTGCCMG
--NNACTTGCCTT
 C T A G A G T C A G T C G C A T C G A T A T G C A G C T A C G T A C T G A T G C A G T C G T A C A C T G
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T