Information for 2-GAACCCTGCCACT (Motif 3)

A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
Reverse Opposite:
G T C A A C T G A G C T A T C G A T C G A T G C C G T A C T A G T A C G A C T G A C G T A C G T A G T C
p-value:1e-12
log p-value:-2.846e+01
Information Content per bp:1.761
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif35.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets35.7 +/- 22.2bp
Average Position of motif in Background43.3 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

INSM1/MA0155.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAACCCTGCCACT
CGCCCCCTGACA--
A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAACCCTGCCACT
TGGCAGNCTGCCAG-
A C G T A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAACCCTGCCACT---
TACGCCCCGCCACTCTG
A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GAACCCTGCCACT
NNNNTTGACCCCTNNNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAACCCTGCCACT
----CTTGGCAA-
A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAACCCTGCCACT
TGACACCTGTCA--
A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAACCCTGCCACT---
----NCTGTCAATCAN
A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAACCCTGCCACT---
----SCTGTCAVTCAV
A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PKNOX1/MA0782.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAACCCTGCCACT
TGACACCTGTCA--
A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GAACCCTGCCACT
NNANTTGACCCCTNNNN--
A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A T C G A T A G C A G T C A G T C C G A T T A C G A T G C A T G C C T G A T A G C A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G A C G T A C G T