Information for 2-GCGSTGRGCA (Motif 6)

A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A
Reverse Opposite:
A G C T A T C G A T G C G A C T A G T C T G C A A T C G A G T C C A T G A T G C
p-value:1e-9
log p-value:-2.303e+01
Information Content per bp:1.714
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif1688.3
Percentage of Background Sequences with motif3.56%
Average Position of motif in Targets54.0 +/- 24.2bp
Average Position of motif in Background50.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCGSTGRGCA-
--NGTGGGCAT
 A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCGSTGRGCA
WDNCTGGGCA
 A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCGSTGRGCA-
--GGTTGGCAT
 A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCGSTGRGCA----
GGGCCGTGTGCAAAAA
 A C G T A C G T A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T A C G T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGSTGRGCA-----
NNNNTTGGGCACNNCN
 A C G T A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGSTGRGCA-------
NNNNTGAGCACTGTNNG
 A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCGSTGRGCA--
GTGCCGTGTGCAAA
 A C G T A C G T A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCGSTGRGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCGSTGRGCA-
GCCGCGCAGTGCGT
 A C G T A C G T A C G T A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCGSTGRGCA----
---GTCAGCANNTN
 A T C G G T A C C T A G A T G C A C G T C T A G C T G A A T C G A T G C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T