Information for 4-GAVSTRAATW (Motif 11)

A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T
Reverse Opposite:
C G T A G T C A A C G T A G C T A G C T C G T A A T C G A T C G A G C T A G T C
p-value:1e-8
log p-value:-2.022e+01
Information Content per bp:1.648
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif544.3
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets56.9 +/- 28.0bp
Average Position of motif in Background49.4 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAVSTRAATW--
TTGACCTANTTATN
 A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAVSTRAATW------
GGACTGAATTCATGCC
 A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAVSTRAATW
TGACCTARTT-
 A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GAVSTRAATW
GATGACGTCA---
 A C G T A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T
T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A A C G T A C G T A C G T

CREB1/MA0018.2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAVSTRAATW
TGACGTCA---
 A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T
A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A A C G T A C G T A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAVSTRAATW--
CTGAGGTAATTAAT
 A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAVSTRAATW----
CTGAGCTAATTACCGT
 A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAVSTRAATW-
NNTNTCATGAATGT
 A C G T A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0031.1_Hoxa3_1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAVSTRAATW--
TGGAGGTAATTAAC
 A C G T A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PH0058.1_Hoxb3/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAVSTRAATW------
TGAGCTAATTAGTTGGA
 A C G T A C T G C T G A T A G C T A G C C G A T T C G A C T G A G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A