Information for 2-CTTWRAATTACANGAT (Motif 2)

A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
Reverse Opposite:
C G T A A C G T G A T C A C T G A C G T T A C G A G C T T C G A C G T A A G C T A C G T A G C T C G A T C G T A C G T A T C A G
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.687
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif14.81%
Number of Background Sequences with motif23.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets58.2 +/- 33.0bp
Average Position of motif in Background49.0 +/- 44.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTTWRAATTACANGAT
ATTTGAATT-------
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTTWRAATTACANGAT
-TTTGAAACCG-----
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTTWRAATTACANGAT---
HWWNNTAATTRGCHAATTAN
 A C G T A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T A C G T A C G T A C G T
G C A T C G A T C G A T C A G T G A C T G A C T T C G A C G T A C G A T A G C T C T G A A C T G T G A C G A C T T C G A C G T A C G A T A G C T C T G A C T A G

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTTWRAATTACANGAT
GAAAAAATTGCAAGG-
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTTWRAATTACANGAT
NNNTAACAATTATAN---
 A C G T A C G T A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CTTWRAATTACANGAT
NCGTATTATAATCNTA----
 A C G T A C G T A C G T A C G T A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CTTWRAATTACANGAT
ATTTGCATAACAAAG-
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CTTWRAATTACANGAT
--NTGATTGACAGN--
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTTWRAATTACANGAT
CCTTTGATGT-------
 A C G T A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CTTWRAATTACANGAT--
--TATAATTATAATATTC
 A G T C A C G T C G A T C G T A T C A G C G T A C T G A C G A T A G C T C T G A A G T C C G T A A G T C C A T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C