Information for 6-TTHACAATCA (Motif 13)

A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A
Reverse Opposite:
A C G T A T C G T C G A C G A T C A G T A C T G C G A T C G A T C T G A C T G A
p-value:1e-2
log p-value:-5.964e+00
Information Content per bp:1.655
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif7.41%
Number of Background Sequences with motif104.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets51.2 +/- 26.2bp
Average Position of motif in Background54.4 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:TTHACAATCA-
---CCAATCAA
 A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTHACAATCA---
NNNTAACAATTATAN
 A C G T A C G T A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTHACAATCA-
SCTGTCAVTCAV
 A C G T A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTHACAATCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTHACAATCA-
NCTGTCAATCAN
 A C G T A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTHACAATCA--
CCATCAATCAAA
 A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTHACAATCA---
---CAAATCACTG
 A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTHACAATCA
-NAACAAT--
 A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTHACAATCA-------
TCACCCATCAATAAACA
 A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTHACAATCA
GTAAACAAT--
 A C G T A G C T A G C T G C T A G C T A G T A C G T C A G C T A A G C T T A G C C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T