Information for 6-GGCAGGCAGAAAG (Motif 12)

A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.238e+00
Information Content per bp:1.952
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.0 +/- 0.0bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGAAAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGAAAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGCAGGCAGAAAG--
-----ACAGGAAGTG
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGCAGGCAGAAAG
--CWGGCGGGAA-
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCAGAAAG
TBGCACGCAA----
 A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGAAAG
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAGGCAGAAAG--
-----ACAGGAAGTG
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGCAGGCAGAAAG-
----GGAACAAAGR
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGAAAG
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGAAAG
-CCAGACAG----
 A C T G A C T G A G T C G T C A A C T G A C T G A G T C C G T A A C T G C T G A G T C A C G T A A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T