Information for 5-SCSMGYTGWGTGYWCC (Motif 7)

A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
Reverse Opposite:
C T A G C T A G G C A T C T A G A G T C C G T A A T G C C G T A A G T C C T G A C T G A G T A C A C G T A T C G A C T G A T C G
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.812
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.5 +/- 15.4bp
Average Position of motif in Background49.8 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:SCSMGYTGWGTGYWCC
----CTTGAGTGGCT-
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCSMGYTGWGTGYWCC
-CCTGCTGAGH-----
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:SCSMGYTGWGTGYWCC
-----TTGAGTGSTT-
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:SCSMGYTGWGTGYWCC
----CGTGGGTGGTCC
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SCSMGYTGWGTGYWCC
TNTCCTGCTGTGNNG---
 A C G T A C G T A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SCSMGYTGWGTGYWCC
TCNCCTGCTGNGNNN---
 A C G T A C G T A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:SCSMGYTGWGTGYWCC----
---NTNTATGTGCACATNNN
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--SCSMGYTGWGTGYWCC
CCCCCTGCTGTG------
 A C G T A C G T A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----SCSMGYTGWGTGYWCC
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:SCSMGYTGWGTGYWCC
-----TTAAGTGCTT-
 A T G C A G T C A T G C G T C A A C T G G A C T A G C T A C T G G C A T A T C G A C G T A C T G A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T