Information for 20-TCCCTGCAGGGCAGCG (Motif 31)

A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
Reverse Opposite:
A G T C A T C G A G T C A C G T A C T G A G T C A G T C G T A C A C G T A C T G A G T C C G T A C T A G A C T G A T C G C G T A
p-value:1e-6
log p-value:-1.478e+01
Information Content per bp:1.899
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.3 +/- 5.6bp
Average Position of motif in Background71.1 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
TGCCCNNAGGGCA---
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
TGCCCTNAGGGCA---
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
DCHCAGCAGGRGGCC-
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
TGCCCTNAGGGCA---
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCCCTGCAGGGCAGCG
CCCCCTGCTGTG-----
 A C G T A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCCCTGCAGGGCAGCG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCCCTGCAGGGCAGCG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
DCTCAGCAGG------
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TCCCTGCAGGGCAGCG
-----TNNGGGCAG--
 A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TCCCTGCAGGGCAGCG
GAGCACAGCAGGACA---
 A C G T A C G T A C G T T A G C G T A C A G T C A C G T A C T G A G T C C G T A A C T G A C T G A C T G G T A C C G T A A C T G A T G C C T A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T