Information for 1-CATGCATGYA (Motif 2)

G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A
Reverse Opposite:
G A C T T C G A A T G C C G T A A G C T T C A G G A T C C T G A A G C T C T A G
p-value:1e-14
log p-value:-3.407e+01
Information Content per bp:1.672
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif11.85%
Number of Background Sequences with motif1340.8
Percentage of Background Sequences with motif3.56%
Average Position of motif in Targets52.8 +/- 23.8bp
Average Position of motif in Background45.4 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CATGCATGYA
--TGCGTG--
 G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGYA-----
TAAATACATGTAAAATT
 A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CATGCATGYA
NNTNTCATGAATGT-
 A C G T A C G T A C G T A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CATGCATGYA-
-TTGCGTGCVA
 G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGYA-----
AAAATACATGTAATACT
 A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATGCATGYA---
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PH0084.1_Irx3_2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGYA-----
AATATACATGTAATATA
 A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGYA-----
AAAATACATGTAAAAAT
 A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGYA-----
AATATACATGTAAAATT
 A C G T A C G T G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGCATGYA
-RTACGTGC-
 G A T C C T G A A G C T C T A G A G T C C T G A A C G T A T C G A G C T C T G A
A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T