Information for 11-CGTGCGTCCCTGTKAC (Motif 19)

A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
Reverse Opposite:
A C T G A G C T T G C A C T G A A T G C C T G A A C T G A C T G A T C G T G C A G T A C C A T G A G T C C G T A A T G C C T A G
p-value:1e-8
log p-value:-1.886e+01
Information Content per bp:1.728
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.9 +/- 26.9bp
Average Position of motif in Background54.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARG/MA0066.1/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGTGCGTCCCTGTKAC-----
-GTAGGTCACGGTGACCTACT
 A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTCCCTGTKAC
GGACGTGC-----------
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGTCCCTGTKAC
RTACGTGC-----------
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CGTGCGTCCCTGTKAC
TGCCTGCGYCMCCTT---
 A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCGTCCCTGTKAC
TTGCGTGCVA---------
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGTCCCTGTKAC
TACGTGCV----------
 A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCGTCCCTGTKAC
GGGTACGTGC-----------
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CGTGCGTCCCTGTKAC-
-GTAGGTCACTGGGTCA
 A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGTCCCTGTKAC
TGCGTG------------
 A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCGTCCCTGTKAC
NNCGCGTGNN----------
 A C G T A C G T A C G T A C G T A G T C A T C G C G A T A C T G G T A C A C T G A C G T A T G C G T A C T A G C A G C T A T C G A G C T A C G T C T G A A G T C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T