Information for 1-GAGGGAGCTGCCY (Motif 1)

A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
Reverse Opposite:
C T A G A T C G A C T G A G T C C G T A T A C G G T A C A G C T A G T C A T G C A G T C A C G T A G T C
p-value:1e-13
log p-value:-3.155e+01
Information Content per bp:1.819
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif46.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets43.9 +/- 31.3bp
Average Position of motif in Background44.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0010.1_Egr1_1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGAGCTGCCY
ANTGCGGGGGCGGN--
 A C G T A C G T A C G T A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------GAGGGAGCTGCCY
SMCAGTCWGAKGGAGGAGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGGGAGCTGCCY
-NGGGGATTTCCC
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAGGGAGCTGCCY----
--GGGCGATGACCAYTC
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGGGAGCTGCCY------
---GGGTGTGCCCAAAAGG
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGAGCTGCCY
NNVDGGGYGGGGCYN
 A C G T A C G T A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGGGAGCTGCCY-
-AGGGGAATCCCCT
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C A C G T
A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGAGCTGCCY
GGCGGGGGCGGGGG
 A C G T A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAGGGAGCTGCCY
--GGGGATTTCC-
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

KLF5/MA0599.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGGGAGCTGCCY
-GGGGNGGGGC--
 A C T G C G T A A C T G A T C G A C T G C T G A A C T G A T G C A C G T A C T G T G A C A T G C A G T C
A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T