Information for 2-CTGTCTAGTTYRC (Motif 4)

A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
Reverse Opposite:
A C T G A G C T C T G A C G T A C G T A A T G C A C G T C G T A A C T G C G T A A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.3 +/- 33.5bp
Average Position of motif in Background41.8 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGTCTAGTTYRC
CTGTCTGG-----
 A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTAGTTYRC
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTAGTTYRC---
GAAAACTAGTTAACATC
 A C G T A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTAGTTYRC
VBSYGTCTGG-----
 A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTAGTTYRC
GCTGTCAA------
 A C G T A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGTCTAGTTYRC----
ANNNCTAGTTAACNGNN
 A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGTCTAGTTYRC
TWGTCTGV-----
 A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGTCTAGTTYRC
---ACTAGTTAAC
 A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCTAGTTYRC
CCTGTCAA------
 A C G T A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGTCTAGTTYRC
-TGTCTAGACG--
 A G T C A C G T A C T G C G A T A G T C A C G T C G T A A T C G A C G T A C G T A G C T C T G A A G T C
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T