Information for 1-CCCTTCCATC (Motif 3)

G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C
Reverse Opposite:
C T A G C T G A C G A T T C A G T C A G C T G A C G T A C T A G C T A G C A T G
p-value:1e-8
log p-value:-2.008e+01
Information Content per bp:1.604
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif31.38%
Number of Background Sequences with motif5837.9
Percentage of Background Sequences with motif14.28%
Average Position of motif in Targets45.9 +/- 27.3bp
Average Position of motif in Background49.0 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCCTTCCATC--
GYCATCMATCAT
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCCTTCCATC--------
-TCACCCATCAATAAACA
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTCCATC--------
GCCTCCTCCMTCWGACTGKS
 A C G T A C G T G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCCTTCCATC--
--ATTGCATCAT
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T
A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCCTTCCATC--
--ATTGCATCAK
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T
A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTTCCATC--
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCCTTCCATC----
----GCCATCTGTT
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCCTTCCATC----
----ACCATCTGTT
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTCCATC
TKCTGTTCCA--
 A C G T A C G T G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCTTCCATC
ATTTTCCATT
 G T A C G A T C G A T C G C A T G A C T A G T C A G T C G C T A A G C T G A T C
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T